RnoEX0002296 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3705916-3760388:+
Coord C1 exon
chr18:3705916-3706053
Coord A exon
chr18:3732338-3732490
Coord C2 exon
chr18:3760271-3760388
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGACCTTTTCTTCTCACCAGGGC
3' ss Score
9.16
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AACCTGGCCCAGGCAGCGAAGATCTGGGCCACCGCCACCTGCGGGGAGCGGGGCCTGGATGTCTCAAGGCCCCGGCCTGAGCTTTTCTGCAAATTGGTGGGCGGCCCCACTGCACCGGGCAGCGGCCACACCATCCAG
Seq A exon
GGCCAGTTCTGCGACTACTGTAATTCTGAGGATTCCAGGAAGGCACATCCGGCCATCCACGCGATTGATGGGTCTGAACGGTGGTGGCAGAGCCCGCCTCTCTCCTCCGGCACACAGTACAACAAAGTCAACCTCACCTTGGATCTGGGTCAG
Seq C2 exon
CTCTTCCATGTGGCTTATATCTTAATCAAGTTTGCGAACTCTCCCCGCCCTGATCTTTGGGTCCTGGAACGATCCGTAGACTTTGGAAACACCTACTCGCCCTGGCAGTATTTTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(18.4=97.8)
A:
PF0005512=Laminin_N=FE(20.4=100)
C2:
PF0005512=Laminin_N=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGCGAAGATCTGGG
R:
CAAAATACTGCCAGGGCGAGT
Band lengths:
244-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]