GgaEX6021376 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102780728-102795530:+
Coord C1 exon
chr2:102780728-102781006
Coord A exon
chr2:102785764-102785916
Coord C2 exon
chr2:102795413-102795530
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTTCTGTGTTTCAGGGA
3' ss Score
11.3
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGGCTGCGGCGCCGGTTCGCTTTGCCCACGGTACCCCAGCACCGGGCTGCCGGCTCCTGTGGGCTCTGCTCCCGCCGCTCTTCTCCCTGTGCCCTGCGCAGACGGAGCCCCCCGGCTCCCTCGGACTCAGCCTCCACCCGCCGTACTTCAACCTGGCCGAGACGGCCGGCATCTCGGCGACCGCTACCTGTGGGGAGGAGGAGGGCGGCGGGCGGCCGGAGCTGTACTGCAAGCTGGTGGGGGGGCCGGCCGCAGCCCCGCTGGGGAGAGCCATACAG
Seq A exon
GGACAGTTCTGTGACTACTGCAATGCTGGTGATCCCAGTAAAGCTCACCCAATCACTAACGCCATTGATGGAACGGAGCGCTGGTGGCAAAGTCCTCCTCTTTCTAAGGGCTTAAAGTACAATGAAGTCAATGTCACTTTAGATCTGGGACAG
Seq C2 exon
CTCTTCCATGTTGCCTATATTCTTATCAAGTTTGCAAATTCCCCTCGTCCAGATCTCTGGATCTTAGAAAGATCAGTGGACTTTGGAAGAACTTACACTCCCTGGCAGTATTTTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCAACCTGGCCGAGAC
R:
ACTGCCAGGGAGTGTAAGTTCT
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]