DreEX0042417 @ danRer10
Exon Skipping
Gene
ENSDARG00000058543 | lama5
Description
laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
Coordinates
chr23:9774288-9833730:-
Coord C1 exon
chr23:9833285-9833730
Coord A exon
chr23:9828519-9828671
Coord C2 exon
chr23:9774288-9774405
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTCCTGTGTCATCAGGGT
3' ss Score
9.31
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAAAGAGAAGGTGCCCACCGAGCCGCATTTCTACTTACTACTGTGTACTGCACACTGAAAAGAAACTGGAACAACTTTTCTCATATTGAATTTCTCCAGATGTTCGTGAATTTCAGCTCTAAGTGGACATTTTGAGAGGTTTTTAGAGTGTTGAGTGTGCGGCACAGGTGAAGATGGCGAGGGGACCATCAGGACGAGCGTCGCGCACACCGGTGCTCGTGTTTCTGCCTCTTCTACTGCTCACCGGAACTTTAACAGCGCAAGAGTTGCCCGTCAACGGCGTGAACGGATTCAGCTTGCACCCACCGTACTTTAATCTAGCGGAGGGGACGAAAATCACAGCCACAGCAACCTGCGGAGTGGACGAGAACGAGCAGCCTATCCAGGACCTGTACTGCAAACTGGTTGGGGGGCCCGTGTCAGGGGATCCGAGTCAGACTATTCAG
Seq A exon
GGTCAGTACTGTGACATCTGCTCTTCGCAAGACACGAACAGAGCACATCCCATCAGCAACGCCATCGATGGCACCGAACGCTGGTGGCAAAGCCCTCCTCTCTCCCGCAGTGCCAAACACAACCAGGTCAACGTCACCCTGGACCTGGGACAG
Seq C2 exon
CTTTTCCATGTTGCATATGTGCTTATCAAGTTTGCCAACTCGCCCCGACCAGACCTGTGGGTGCTCGAGCGCTCCATTGACTTTGGCAAAACATACCAGCCATGGCAGTTCTTCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058543-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(19.7=53.8)
A:
PF0005512=Laminin_N=FE(20.1=100)
C2:
PF0005512=Laminin_N=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTAGCGGAGGGGACGAAAA
R:
GAACTGCCATGGCTGGTATGT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]