BtaEX0019891 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55379959-55393962:+
Coord C1 exon
chr13:55379959-55380201
Coord A exon
chr13:55385212-55385364
Coord C2 exon
chr13:55393845-55393962
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGACTACCTCTCCCCCACAGGGC
3' ss Score
11.3
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGCCCCGCGCCGCTGCTGCTGGCCGGACTGGCGTTGCTGGGCGCGGCGCGGGCGCGGGCGGCGGGCGGTGGCTTCAGCCTGCACCCGCCCTACTTCAACCTGGCTGAGGGCGCCCGCATCGCCGCCTCGGCCACCTGCGGCGAGGAGGCCCCTGCGCGCGGCGCCCCGCGCCCCACCGAGGACCTCTACTGCAAGTTGGTGGGGGGCCCCGTGGCCGGCGGGGACCCCAACCAGACCATCCAG
Seq A exon
GGCCAGTACTGCGACATCTGCACGGCTGCCAGCAGCAACAGGGCTCACCCCGTGAGCAACGCCATTGACGGCACGGAGCGCTGGTGGCAGAGCCCACCATTGTCCCGGGGCCTAGAGTACAACGAGGTCAACGTCACCCTGGACCTGGGCCAG
Seq C2 exon
GTTTTCCACGTGGCCTACGTGCTCATCAAGTTTGCCAATTCCCCTCGGCCAGACCTCTGGGTGCTGGAGCGGTCCACAGACTTTGGCCACACCTACCAGCCCTGGCAGTACTTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(21.3=66.7)
A:
PF0005512=Laminin_N=FE(19.7=100)
C2:
PF0005512=Laminin_N=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACTTCAACCTGGCTGAG
R:
GGTAGGTGTGGCCAAAGTCTG
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development