MmuEX6107459 @ mm10
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:180208254-180225859:-
Coord C1 exon
chr2:180225491-180225859
Coord A exon
chr2:180221226-180221378
Coord C2 exon
chr2:180208254-180208371
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGGTCATCTTCTCCCTGCAGGGC
3' ss Score
11.16
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACTTGCCGGGCTCCTGCGGTGCGCGCTGTCCCTAGAGCCGCAGCCCCCAGCAGGAAAATGGCGAAGCGCGGAGGGCAGCTCTGCGCGGGGAGCGCACCGGGCGCTCTTGGCCCCCGGAGCCCCGCGCCACGGCCGCTGCTACTGCTGCTGGCTGGACTGGCGCTGGTAGGCGAGGCGCGCACTCCCGGGGGCGATGGCTTCAGCCTGCACCCGCCCTACTTCAACCTGGCGGAGGGCGCTCGCATCACCGCGTCCGCGACCTGCGGCGAGGAGGCCCCGACGCGCAGTGTCTCACGCCCCACCGAGGACCTCTACTGCAAGCTGGTTGGGGGTCCGGTGGCTGGCGGAGATCCCAATCAGACAATCCAG
Seq A exon
GGCCAGTACTGTGACATCTGTACAGCTGCCAACAGCAACAAGGCACACCCTGTGAGCAACGCCATCGATGGCACGGAGCGCTGGTGGCAGAGCCCACCCCTGTCCCGTGGCCTGGAGTACAATGAGGTCAACGTCACACTGGACCTGGGCCAG
Seq C2 exon
GTGTTCCATGTGGCCTATGTGCTCATCAAGTTTGCCAACTCACCTCGGCCTGACCTCTGGGTGCTGGAGCGGTCCACAGACTTCGGTCACACTTATCAGCCGTGGCAGTTCTTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'2-3,'2-2,8-3=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(21.3=51.9)
A:
PF0005512=Laminin_N=FE(19.7=100)
C2:
PF0005512=Laminin_N=FE(15.4=100)
Main Skipping Isoform:
ENSMUST00000015791fB2199
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACTTCAACCTGGCGGAG
R:
AGTGTGACCGAAGTCTGTGGA
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types