GgaEX6023251 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr20:9863085-9863545:+
Coord C1 exon
chr20:9863085-9863204
Coord A exon
chr20:9863330-9863431
Coord C2 exon
chr20:9863503-9863545
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCTCCGTTCCCCACTGTAGGCG
3' ss Score
9.21
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CCAGCCCTGCTGCCTGCTGAGGAGCAGCGCTTCCAGGACTGCACCGAGGTGCTCCGGGCTGGCAGCCGTGCCAGCGGGGTGTACACCCTGCACATCACCAACCTGAGCGAGCCCAGGAAG
Seq A exon
GCGTTCTGCGACATGGAGACAGACGGCGGCGGCTGGACGGTCATCCAGCTCCGCACCAACGGCAGCGTCAGCTTCCAGCGGGGCTGGAGGGAGTACAAGCAG
Seq C2 exon
GGCTTTGGGGACGCGGCGGGGGAGCACTGGCTGGGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023639-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(28.6=75.0)
A:
PF0014713=Fibrinogen_C=FE(31.4=100)
C2:
PF0014713=Fibrinogen_C=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGCCTGCTGAGGAG
R:
CTTCATTGCCCAGCCAGTGC
Band lengths:
158-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]