DreEX6024296 @ danRer10
Exon Skipping
Gene
ENSDARG00000076787 | angpt4
Description
angiopoietin 4 [Source:ZFIN;Acc:ZDB-GENE-110104-1]
Coordinates
chr6:52020009-52024537:+
Coord C1 exon
chr6:52020009-52020121
Coord A exon
chr6:52020247-52020348
Coord C2 exon
chr6:52024371-52024537
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTATCGTATGCTTCTGACAGGTC
3' ss Score
7.02
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCATTACGCCAAATGAGCAGCGTTTCCGAGACTGTGCTGAGGCCTATAAATCCGGTCACAACACCAGCGGCGTCTACCACATTTACATCGGAGACATGACGGAGCCAACCAAG
Seq A exon
GTCTTCTGTGATATGGTGACAAGTGGAGGTGGCTGGACTGTATTCCAGCACAGAGCCAATGGAAGTGTGAACTTCCAGAAAGGCTGGAAAGACTACAAGCTG
Seq C2 exon
GGATTTGGTGATCCTAGTGGAGAGCACTGGTTAGGTAATGAGGCCATTCACCTGATCACCAGTCAAGGCCAGTACTCCCTTCGAGTGGAACTGAAGGACTGGGAGGAGAACGGAGCATATGCACTGTATGACAAATTCCAGCTGACCAGTGAAAAACAGCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076787-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=78.9)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCGAGACTGTGCTGAGG
R:
TGCTGTTTTTCACTGGTCAGCT
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]