HsaEX6081859 @ hg19
Exon Skipping
Gene
ENSG00000154188 | ANGPT1
Description
angiopoietin 1 [Source:HGNC Symbol;Acc:484]
Coordinates
chr8:108296910-108315595:-
Coord C1 exon
chr8:108315468-108315595
Coord A exon
chr8:108306164-108306265
Coord C2 exon
chr8:108296910-108297076
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCCATTTGTCAGGTG
3' ss Score
8.31
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTTTACTAAAGGGAGGAAAAAGAGAGGAAGAGAAACCATTTAGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAAAGTGGAATCTACACTATTTATATTAATAATATGCCAGAACCCAAAAAG
Seq A exon
GTGTTTTGCAATATGGATGTCAATGGGGGAGGTTGGACTGTAATACAACATCGTGAAGATGGAAGTCTAGATTTCCAAAGAGGCTGGAAGGAATATAAAATG
Seq C2 exon
GGTTTTGGAAATCCCTCCGGTGAATATTGGCTGGGGAATGAGTTTATTTTTGCCATTACCAGTCAGAGGCAGTACATGCTAAGAATTGAGTTAATGGACTGGGAAGGGAACCGAGCCTATTCACAGTATGACAGATTCCACATAGGAAATGAAAAGCAAAACTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154188-'10-12,'10-11,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF089195=F_actin_bind=PD(1.9=2.3),PF0014713=Fibrinogen_C=PU(14.0=69.8)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGGAAAAAGAGAGGAAGAGA
R:
TGTGAATAGGCTCGGTTCCCT
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)