MmuEX6053404 @ mm10
Exon Skipping
Gene
ENSMUSG00000022309 | Angpt1
Description
angiopoietin 1 [Source:MGI Symbol;Acc:MGI:108448]
Coordinates
chr15:42459667-42476505:-
Coord C1 exon
chr15:42476378-42476505
Coord A exon
chr15:42468156-42468257
Coord C2 exon
chr15:42459667-42459833
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTGTTGTTTCCCAGGTA
3' ss Score
10.91
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTTTGCTAAAGGGAGGAAAAAGAGAAGAAGAGAAACCATTTCGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAAAGTGGAATCTACACTATTTATTTTAATAATATGCCAGAACCCAAAAAG
Seq A exon
GTATTTTGCAATATGGATGTGAATGGGGGAGGTTGGACAGTAATACAACACCGGGAAGATGGAAGCCTGGATTTCCAGAGGGGCTGGAAGGAGTATAAAATG
Seq C2 exon
GGTTTTGGGAATCCCTCTGGTGAATATTGGCTTGGGAACGAGTTCATTTTTGCAATAACCAGTCAGAGGCAGTACATGCTGAGGATTGAGCTGATGGACTGGGAAGGGAACCGAGCCTACTCACAGTACGACAGATTCCACATAGGAAATGAAAAGCAGAACTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022309-'14-12,'14-10,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=69.8)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAAAGGGAGGAAAAAGAGA
R:
TCGTACTGTGAGTAGGCTCGG
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types