DreEX6074499 @ danRer10
Exon Skipping
Gene
ENSDARG00000030364 | angpt1
Description
angiopoietin 1 [Source:ZFIN;Acc:ZDB-GENE-010817-1]
Coordinates
chr19:47257688-47266396:-
Coord C1 exon
chr19:47266269-47266396
Coord A exon
chr19:47264759-47264860
Coord C2 exon
chr19:47257688-47257854
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTAATCTTCACTCAGGTG
3' ss Score
7.61
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TGGTACCGAACAGCACCAAGCAGGCTGACGAGGAGCGAAAGTTTCGGGATTGTGCTGATCTTTATCAAGCAGGCTTCCAGAAAAACGGAGTTTACACCATCAATATTAGCCCACAAGAGACCAAAAAG
Seq A exon
GTGTACTGTGTGATGGAGTCTGCTGGCGGAGGCTGGACGGTGATCCAGAAGCGTGAAGACGGCACTGTGGATTTCCAGAAAACATGGAAAGAATATAAGATG
Seq C2 exon
GGTTTTGGAAGCGTGTCGGGCGAACACTGGCTGGGGAACGAATTTGTCCACGTTCTGACCAATCAGAGGCAGCACGGCCTCCGCGTGGAGCTGAGTGACTGGGACGGACACCAGGCCTTCTCTCAGTACGACAGCTTCCACATCGACAGCGAGAAACAGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030364-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(13.6=67.4)
A:
PF0014713=Fibrinogen_C=FE(15.4=100)
C2:
PF0014713=Fibrinogen_C=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACGAGGAGCGAAAGTTT
R:
CTGTCGATGTGGAAGCTGTCG
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]