RnoEX0009289 @ rn6
Exon Skipping
Gene
ENSRNOG00000005854 | Angpt1
Description
angiopoietin 1 [Source:RGD Symbol;Acc:628896]
Coordinates
chr7:81342280-81437431:-
Coord C1 exon
chr7:81437310-81437431
Coord A exon
chr7:81394826-81394927
Coord C2 exon
chr7:81342280-81342639
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCTGTTGTTTCCCAGGTA
3' ss Score
10.91
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTACTAAATCAAACATCCCGTCTTGAAATCCAACTGCTGGAGAATTCATTATCAACATACAAGCTAGAGAAACAGCTTCTCCAACAGACAAATGAAATTCTGAAGATTCAGGAAAAAAACAG
Seq A exon
GTATTTTGCAATATGGATGTGAATGGAGGAGGATGGACAGTAATACAACACCGTGAGGATGGAAGCCTAGATTTCCAGAGGGGCTGGAAGGAGTATAAAATG
Seq C2 exon
GTTGGTGGTTTGATGCCTGTGGCCCTTCCAATCTAAACGGAATGTTCTACACTGCGGGGCAAAACCATGGAAAACTGAATGGGATAAAGTGGCACTACTTCAAAGGACCCAGTTACTCCTTACGTTCCACAACCATGATGATCCGGCCCTTGGACTTCTGAAGGCGCTATGCCAGTATTAGAAACCTGAAAAACAATCTGGGGATGTTCCCGAATGAGAAGCTATCTGGAAGCTTCCGAAACAACCAGCATCGTCTCCCTTCCAGCAGCAAGTGGTTACGTGATGTCACCTGTGTTCTTGACCATGGATCTGGAGCCTTCTGGGGTCACAGAGTCTCCACTCGGGTCACTGTGTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005854_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
ENSRNOT00000007979fB1050
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGTCTTGAAATCCAACTGC
R:
GCCGGATCATCATGGTTGTGG
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]