GgaEX6022092 @ galGal4
Exon Skipping
Gene
ENSGALG00000016083 | ANG-1
Description
angiopoietin-1 precursor [Source:RefSeq peptide;Acc:NP_001186376]
Coordinates
chr2:130988639-131006598:-
Coord C1 exon
chr2:131006471-131006598
Coord A exon
chr2:131001501-131001602
Coord C2 exon
chr2:130988639-130988805
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTGTTACTGCACAGGTC
3' ss Score
9.67
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TTTTACTTAAGAATGCGAAGAAGGAGGAAGAAAAGCCCTTCAGAGACTGTGCAGATGTATACCAATCTGGTTTTAACAAAAGCGGCGTCTACACTATTTATATTAACAATGTGTCAGATCCTAAGAAG
Seq A exon
GTCTTTTGTAATATGGAAGTCAATGGAGGAGGATGGACAGTTATACAGCACCGAGAAGATGGCAGCCTAGATTTCCAGAAAGGCTGGAAAGAATACAAAATG
Seq C2 exon
GGTTTTGGTAGCCCATCAGGTGAACACTGGCTGGGAAATGAATTCATCTTTGCAATTACAAGTCAGAGGCAATATTCTCTAAGAATTGAATTAATGGACTGGGAAGGAAACCGGGCTTATTCACAGTATGACAGGTTTCACATAGGAAATGAAAAGCAAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=69.8)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAAGAAGGAGGAAGAAAAGC
R:
ACTGTGAATAAGCCCGGTTTCC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]