GgaEX6022092 @ galGal3
Exon Skipping
Gene
ENSGALG00000016083 | Q70UN6_CHICK
Description
NA
Coordinates
chr2:136989782-137014585:-
Coord C1 exon
chr2:137014458-137014585
Coord A exon
chr2:137009457-137009558
Coord C2 exon
chr2:136989782-136989948
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTGTTACTGCACAGGTC
3' ss Score
9.67
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TTTTACTTAAGAATGCGAAGAAGGAGGAAGAAAAGCCCTTCAGAGACTGTGCAGATGTATACCAATCTGGTTTTAACAAAAGCGGCGTCTACACTATTTATATTAACAATGTGTCAGATCCTAAGAAG
Seq A exon
GTCTTTTGTAATATGGAAGTCAATGGAGGAGGATGGACAGTTATACAGCACCGAGAAGATGGCAGCCTAGATTTCCAGAAAGGCTGGAAAGAATACAAAATG
Seq C2 exon
GGTTTTGGTAGCCCATCAGGTGAACACTGGCTGGGAAATGAATTCATCTTTGCAATTACAAGTCAGAGGCAATATTCTCTAAGAATTGAATTAATGGACTGGGAAGGAAACCGGGCTTATTCACAGTATGACAGGTTTCACATAGGAAATGAAAAGCAAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(15.1=96.0)
A:
PF0014713=Fibrinogen_C=FE(20.8=100)
C2:
PF0014713=Fibrinogen_C=FE(34.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAAGAAGGAGGAAGAAAAGC
R:
ACTGTGAATAAGCCCGGTTTCC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]