MmuEX6105861 @ mm10
Exon Skipping
Gene
ENSMUSG00000027460 | Angpt4
Description
angiopoietin 4 [Source:MGI Symbol;Acc:MGI:1336887]
Coordinates
chr2:151934407-151939071:+
Coord C1 exon
chr2:151934407-151934522
Coord A exon
chr2:151936667-151936768
Coord C2 exon
chr2:151938905-151939071
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTGTCCCACCTCCCCCCAGGTG
3' ss Score
11.62
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTCCTTAAAGACACCTAAGCCAGTGTTCCAGGACTGTGCAGAGATCAAGCGCTCCGGGGTTAATACCAGCGGTGTCTATACCATCTATGAGACCAACATGACAAAGCCTCTCAAG
Seq A exon
GTGTTCTGTGACATGGAGACTGATGGAGGTGGCTGGACCCTCATCCAGCACCGGGAGGATGGAAGCGTAAATTTCCAGAGGACCTGGGAAGAATACAAAGAG
Seq C2 exon
GGTTTTGGTAATGTGGCCAGAGAGCACTGGCTGGGCAATGAGGCTGTGCACCGCCTCACCAGCAGAACGGCCTACTTGCTACGCGTGGAACTGCATGACTGGGAAGGCCGCCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027460-'4-5,'4-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTTCCAGGACTGTGCAG
R:
TGCCCAGCTGGAAGTTCTCAT
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types