BtaEX6065867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021811 | ANGPTL4
Description
Bos taurus angiopoietin 4 (ANGPT4), mRNA. [Source:RefSeq mRNA;Acc:NM_001076483]
Coordinates
chr13:60762676-60766569:+
Coord C1 exon
chr13:60762676-60762791
Coord A exon
chr13:60764835-60764936
Coord C2 exon
chr13:60766403-60766569
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTCAATTCTCTCCAGGTG
3' ss Score
11.23
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CCTCCATGAGGGCAGCTGACCAGCTGTTCCAGGACTGTGCGGAGATCCAGCGCTTTGGGGCCAATGCCAGTGGCATCTACACCATCCATGTGGCCAATGTGACAGAGCCCAGAAAG
Seq A exon
GTGTTCTGTGACATGGAGGCCAGTGGAGGTGGGTGGACCCTCATTCAGCGCCGTGAGAATGGTAGCGTGAATTTCCAACGGAACTGGAAGGATTACAAACAG
Seq C2 exon
GGCTTTGGCAACCCAGCCGGAGAGCACTGGCTAGGCAATGAAGTGGTGCACCAGCTCACCAGCAGGGCAACCTACTCTCTGCGAGTGGAGCTGCAAGATTGGGAAGGCAACGAGGCCTACGCCCAGTATGAGCACTTCCAGCTGGGCAGCGAGGCGCAGCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021811-'5-8,'5-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCAGCTGTTCCAGGACT
R:
CTGGAAGTGCTCATACTGGGC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]