RnoEX0009300 @ rn6
Exon Skipping
Gene
ENSRNOG00000005008 | Angpt4
Description
angiopoietin 4 [Source:RGD Symbol;Acc:1307539]
Coordinates
chr3:147445526-147449611:+
Coord C1 exon
chr3:147445526-147445641
Coord A exon
chr3:147447134-147447235
Coord C2 exon
chr3:147449445-147449611
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTCGTCCCACCTCCCCACAGGTG
3' ss Score
12.13
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
TTTCCTTAAAGACGCCTAAGCCGCTGTTCCGGGATTGTGCAGAGATCAAGCGCTCTGGAGCCAACACCAGTGGTGTCTATACCATCCATGGGGCCAACATGACAAAGCCTCTCAAG
Seq A exon
GTGTTCTGTGACATGGAGACTGATGGAGGTGGCTGGACCCTCATCCAGCGCAGGGAGGATGGAAGCTTGAATTTCCAGAGGACTTGGGAGGAATACAAAGAG
Seq C2 exon
GGTTTTGGTAATGTGGCTAGAGAACACTGGCTGGGCAATGAGGCTGTGCACAGCCTCACCAGCAGAACGGCCTACTTGCTACGTGTGGAGCTGCATGACTGGGAAGGCCACCAGACCTCCATCCAGTATGAGAACTTCCAGCTGGGCAGCGAGAGGCAGCGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005008_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAGACGCCTAAGCCGCTG
R:
GCCCAGCTGGAAGTTCTCATAC
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]