GgaEX7009053 @ galGal4
Exon Skipping
Gene
ENSGALG00000026890 | ANGPT4
Description
angiopoietin 4 [Source:HGNC Symbol;Acc:HGNC:487]
Coordinates
chr20:10242350-10242930:+
Coord C1 exon
chr20:10242350-10242465
Coord A exon
chr20:10242591-10242692
Coord C2 exon
chr20:10242764-10242930
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCTCCGTTCCCCACTGTAGGCG
3' ss Score
9.21
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CCCTGCTGCCTGCTGAGGAGCAGCGCTTCCAGGACTGCACCGAGGTGCTCCGGGCTGGCAGCCGTGCCAGCGGGGTGTACACCCTGCACATCACCAACCTGAGCGAGCCCAGGAAG
Seq A exon
GCGTTCTGCGACATGGAGACAGACGGCGGCGGCTGGACGGTCATCCAGCTCCGCACCAACGGCAGCGTCAGCTTCCAGCGGGGCTGGAGGGAGTACAAGCAG
Seq C2 exon
GGCTTTGGGGACGCGGCGGGGGAGCACTGGCTGGGCAATGAAGCTGTGCACCTCCTGACGAGCCGGGAACCCTACGTGCTGCGCGTGGAGCTGCGGGACTGGGAGGGCAGCCAGGTCTATGCCCACTATGGGAGGTTCCAGCTGGACAGCGAGCGGCAGCTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026890-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.0=76.9)
A:
PF0014713=Fibrinogen_C=FE(15.3=100)
C2:
PF0014713=Fibrinogen_C=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCTTCCAGGACTGC
R:
TCCAGCTGGAACCTCCCATAG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]