GgaEX6024652 @ galGal4
Exon Skipping
Gene
ENSGALG00000001608 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr22:1861582-1867575:+
Coord C1 exon
chr22:1861582-1861800
Coord A exon
chr22:1867255-1867398
Coord C2 exon
chr22:1867472-1867575
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTGTATCTTTTCCCTTCAGGCC
3' ss Score
11.01
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GAAATGATAACAGCGAAGCCCTTCCAGAGTCCATCCCATCTGCTCCTGGAACACTGCCTCACTTCATGGAGGAACCAGATGATGCCTACATTATCAAAAGCAACCCCATTGTCTTACGGTGCAAAGCCATGCCAGCCATGCAGATTTTCTTCAAGTGCAATGGTGAATGGGTGCACCAAAACGAGCACGTGTCAGAGGAAAGCATGGATGAAGCTACAG
Seq A exon
GCCTGAAGGTCCGGGAGGTGTTCATTAATGTGACGAGGCAGCAGGTGGAGGACTTCCATGGGCCAGAAGATTACTGGTGTCAGTGCGTGGCATGGAGCCATCTAGGGACCTCGAAGAGCAGGAAGGCGTCCGTCCGCATCGCTT
Seq C2 exon
ATTTGAGGAAAAACTTTGAGCAAGACCCCCAGGGGAAGGAGGTTCCTATTGAAGGGATGATCGTTCTGCACTGCCGGCCCCCCGAGGGCGTCCCTGCAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608-'2-3,'2-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAACACTGCCTCACTTC
R:
GCAGTGCAGAACGATCATCCC
Band lengths:
249-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]