RnoEX0096639 @ rn6
Exon Skipping
Gene
ENSRNOG00000011858 | Unc5d
Description
unc-5 netrin receptor D [Source:RGD Symbol;Acc:1309245]
Coordinates
chr16:67350539-67390225:+
Coord C1 exon
chr16:67350539-67350802
Coord A exon
chr16:67367012-67367155
Coord C2 exon
chr16:67390122-67390225
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTCTCTGTCTGCCCATCAGGCT
3' ss Score
7.23
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTTTGCTATACAATCCGGGTGCTGATCTCCTCTTCGATTTTCCAGGAGCCGACAGTGGCGAAGTTCTTCCCGACTCCATCCCGTCTGCCCCTGGAACTCTGCCCCATTTCATAGAGGAGCCTGAAGATGCCTACATCATCAAAAGCAACCCTATCGCACTCAGGTGCAAAGCCAGGCCCGCCATGCAGATCTTCTTCAAATGCAACGGGGAGTGGGTCCATCAGAACGAGCACGTGTCAGAAGAAAGCCTGGATGAGAGCTCAG
Seq A exon
GCTTGAAGGTCCGGGAGGTGTTTATCAATGTCACCAGGCAGCAGGTGGAGGACTTCCATGGGCCCGAGGACTACTGGTGCCAGTGTGTTGCGTGGAGCCACCTTGGAACTTCCAAGAGTAGGAAAGCTTCCGTGCGCATAGCCT
Seq C2 exon
ATTTACGGAAAAACTTCGAGCAAGATCCACAAGGCAGGGAGGTTCCTATTGAAGGCATGATCGTATTGCACTGCCGCCCGCCAGAGGGAGTTCCAGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011858-'1-4,'1-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGGCGAAGTTCTTCCC
R:
GCCTTGTGGATCTTGCTCGAA
Band lengths:
249-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]