HsaEX0069396 @ hg19
Exon Skipping
Gene
ENSG00000156687 | UNC5D
Description
unc-5 homolog D (C. elegans) [Source:HGNC Symbol;Acc:18634]
Coordinates
chr8:35406810-35453175:+
Coord C1 exon
chr8:35406810-35407028
Coord A exon
chr8:35425616-35425759
Coord C2 exon
chr8:35453072-35453175
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTTATCTCTCCCACCATCAGGTT
3' ss Score
9.55
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAACTGACAATGGCGAAGCCCTTCCCGAATCCATCCCATCAGCTCCTGGGACACTGCCTCATTTCATAGAGGAGCCAGATGATGCTTATATTATCAAGAGCAACCCTATTGCACTCAGGTGCAAAGCGAGGCCAGCCATGCAGATATTCTTCAAATGCAACGGCGAGTGGGTCCATCAGAACGAGCACGTCTCTGAAGAGACTCTGGACGAGAGCTCAG
Seq A exon
GTTTGAAGGTCCGCGAAGTGTTCATCAATGTTACTAGGCAACAGGTGGAGGACTTCCATGGGCCCGAGGACTATTGGTGCCAGTGTGTGGCGTGGAGCCACCTGGGTACCTCCAAGAGCAGGAAGGCCTCTGTGCGCATAGCCT
Seq C2 exon
ATTTACGGAAAAACTTTGAACAAGACCCACAAGGAAGGGAAGTTCCCATTGAAGGCATGATTGTACTGCACTGCCGCCCACCAGAGGGAGTCCCTGCTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCCTTCCCGAATCCATC
R:
TCCCTTCCTTGTGGGTCTTGT
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)