MmuEX6035211 @ mm10
Exon Skipping
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 netrin receptor D [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:28844734-28891510:-
Coord C1 exon
chr8:28891292-28891510
Coord A exon
chr8:28875496-28875639
Coord C2 exon
chr8:28844734-28844837
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCGTCTGCCCATCAGGCT
3' ss Score
6.6
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGCCGATGGCAGTGAAATTCTTCCCGACTCTATCCCATCTGCCCCTGGAACGCTGCCTCATTTCATCGAGGAGCCCGAAGATGCATACATCATCAAGAGCAACCCGATTGCACTCAGGTGCAAAGCAAGGCCAGCCATGCAGATCTTCTTCAAATGCAATGGGGAGTGGGTCCATCAGAATGAACATGTGTCCGAGGAGAGCCTGGATGAGAGCTCAG
Seq A exon
GCTTGAAGGTCCGGGAAGTGTTTATCAATGTCACCAGGCAGCAAGTGGAGGACTTCCATGGGCCAGAGGACTACTGGTGCCAGTGTGTAGCGTGGAGCCACCTGGGAACGTCCAAGAGTAGGAAGGCATCTGTGCGCATAGCCT
Seq C2 exon
ATTTACGGAAAAACTTTGAACAAGATCCACAAGGCAGGGAGGTTCCTATTGAAGGCATGATCGTGCTGCATTGTCGCCCGCCAGAGGGAGTTCCAGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-'5-5,'5-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGCCTCATTTCATCGAG
R:
GACAATGCAGCACGATCATGC
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types