GgaEX6025174 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5085782-5087143:+
Coord C1 exon
chr23:5085782-5085951
Coord A exon
chr23:5086459-5086615
Coord C2 exon
chr23:5086952-5087143
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTCCTTCCTCCCAGGTG
3' ss Score
12.05
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CTGAATGTGGTTCGTCTGTAACTGGAACTCAGGGTGTTCTGCTGTCCCCCAACTACCCAATAAACTACAACAACAACCACGAGTGCATCTACTCCATCCAGACACAGCCAGGGAAGGGGATCCAGCTGAAAGCCAGGACTTTTGAACTGGAAGCAGGAGATGTCCTCAAG
Seq A exon
GTGTATGATGGCAGCAACAGCTCTGCTCGCCTGCTGGGTTCCTTCAGCCGCTCGGAAATGCTCAGCACCAGCATCAACAGCACTTCCAGCAGCATGTGGCTCGAGTTCATCACCAACAGCGAGAACACCAGCAAAGGCTTTGAGCTGCAGTTCTCTA
Seq C2 exon
GTTTTGAGCTCATCAAATGTGAGGACCCCGGCATCCCGCAGTTTGGCTACAAGGTCCACGATGAGGGGCACTTCGCCGGCAGCTCCGTGTCGTTTAACTGCGACCCCGGATACACCCTGCGGGGCAGCAGAGTGCTGGTCTGCCTGACCGGGGAGCGGAGAGCCTGGGATCAGCCCCTGCCAACCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCAGGGTGTTCTGCTG
R:
TCGCAGTTAAACGACACGGAG
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]