RnoEX0024844 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146581589-146594766:+
Coord C1 exon
chr5:146581589-146581758
Coord A exon
chr5:146593087-146593243
Coord C2 exon
chr5:146594575-146594766
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGGGGGTCTCTGCTATCCAGGTC
3' ss Score
6.52
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CGGAGTGTGGGAACTCGGTCACGGGCACTCAGGGCACTCTGCTGTCCCCCAACTTTCCTGTGAACTACAATAACAATCACGAGTGTATCTACTCCATCCAGACCCAGCCAGGGAAGGGGATTCAGCTTAAAGCCAAGGCATTTGAACTCGCTGAAGGAGACCTCCTCAAG
Seq A exon
GTCTATGACGGCAGTAACAACTCCGCCCGTTTGCTGGGGGTCTTCAGTCGCTCTGAGATGTTGGGGGTGACTTTGAACAGCACATCCAGCAGCCTGTGGCTTGACTTCATCACCGATGCAGAAAACACCAGCAAAGGCTTCGAACTTCAATTCTCTA
Seq C2 exon
GTTTCGAGCTCATCCGATGTGAGGACCCAGGGACCCCACAGTTCGGCTACAAGGTTCACGATGGAGGTCATTTTGCAGGGAGCTCAGTGACCTTCAGCTGTGACCCTGGCTACAGTCTTCGGGGCAGCGAGGAACTGATGTGTCTGAGTGGTGAACGCAGGACGTGGGATCGACCGCTGCCCACCTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'23-32,'23-31,24-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGTCCCCCAACTTTC
R:
AGACTGTAGCCAGGGTCACAG
Band lengths:
252-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]