MmuEX0012900 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128400301-128414390:+
Coord C1 exon
chr4:128400301-128400470
Coord A exon
chr4:128412695-128412851
Coord C2 exon
chr4:128414199-128414390
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTGGGGTCTCTGCTATCCAGGTC
3' ss Score
6.46
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CGGAGTGTGGGAACTCAGTCACAGGCACTCAGGGCACTTTGCTGTCCCCCAACTTTCCTGTGAACTACAATAACAACCACGAGTGTATCTACTCCATCCAGACCCAGCCGGGGAAGGGGATTCAGCTTAAAGCCAAGGCATTTGAGCTCGCTGAAGGAGACCTCCTCAAG
Seq A exon
GTCTATGACGGCACTAACAACTCTGCCCGTTTGCTGGGGGTCTTCAGCCGCTCTGAGATGTTGGGGGTGACTTTGAACAGCACGTCTAGCAGCTTGTGGCTTGACTTCATCACAGATGCAGAAAACACCAGCAAAGGCTTTGAACTTCAGTTCTCTA
Seq C2 exon
GTTTCGAGCTCATCCGATGTGAGGACCCAGGGACCCCACAGTTCGGCTACAAGGTTCACGATGGAGGTCATTTTGCAGGGAGCTCGGTGACCTTCAGCTGTGACCCTGGCTACAGTCTTCGGGGCAGTGAGGAACTGATGTGTCTGAGTGGTGAACGCAGGACGTGGGACCGACCGCTGCCAACCTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'27-30,'27-28,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTTGCTGTCCCCCAACTT
R:
AGACTGTAGCCAGGGTCACAG
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types