GgaEX6025174 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4715279-4716640:+
Coord C1 exon
chr23:4715279-4715448
Coord A exon
chr23:4715956-4716112
Coord C2 exon
chr23:4716449-4716640
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTCCTTCCTCCCAGGTG
3' ss Score
12.05
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
CTGAATGTGGTTCGTCTGTAACTGGAACTCAGGGTGTTCTGCTGTCCCCCAACTACCCAATAAACTACAACAACAACCACGAGTGCATCTACTCCATCCAGACACAGCCAGGGAAGGGGATCCAGCTGAAAGCCAGGACTTTTGAACTGGAAGCAGGAGATGTCCTCAAG
Seq A exon
GTGTATGATGGCAGCAACAGCTCTGCTCGCCTGCTGGGTTCCTTCAGCCGCTCGGAAATGCTCAGCACCAGCATCAACAGCACTTCCAGCAGCATGTGGCTCGAGTTCATCACCAACAGCGAGAACACCAGCAAAGGCTTTGAGCTGCAGTTCTCTA
Seq C2 exon
GTTTTGAGCTCATCAAATGTGAGGACCCCGGCATCCCGCAGTTTGGCTACAAGGTCCACGATGAGGGGCACTTCGCCGGCAGCTCCGTGTCGTTTAACTGCGACCCCGGATACACCCTGCGGGGCAGCAGAGTGCTGGTCTGCCTGACCGGGGAGCGGAGAGCCTGGGATCAGCCCCTGCCAACCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'28-29,'28-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(50.9=94.7)
A:
PF0043115=CUB=PD(47.2=94.3)
C2:
PF0008415=Sushi=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCAGGGTGTTCTGCTG
R:
TCGCAGTTAAACGACACGGAG
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]