GgaEX6025859 @ galGal4
Exon Skipping
Gene
ENSGALG00000007406 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr24:5437529-5438194:+
Coord C1 exon
chr24:5437529-5437688
Coord A exon
chr24:5437785-5437951
Coord C2 exon
chr24:5438099-5438194
Length
167 bp
Sequences
Splice sites
3' ss Seq
AGTAACGTGTCCGTGCGCAGGAA
3' ss Score
7.66
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTGCGGGGAGAGCGTGCGGACGCCGCGTGTGCTGGGCGGGCGGCCGGCGGCCATCGAGGCCTGGCCATGGCAGGTCAGCCTGCGTTACCGCGGGGAGCACATCTGCGGCGGCAGCATCATCGATCCCCTCTGGATCCTCACTGCCGCGCACTGCTTCAG
Seq A exon
GAACAACCCCATCATCCCCAGCTGGCGCGTGAAGGCCGGCTCCGATGTCCTCTCTGGCCCTGCCAACCTTGCCGTGGAGAAGGTCTTCCTGGCCGAGGGGACGCCCACGTCTCCCAACAACAATGACATAGCGCTGGTGAAGCTACAGATCCCTCTGCATATCTCAG
Seq C2 exon
ACAGCACCAAGCCCATCTGCCTGCCCTACTTCGACGAGGAGCTGGAGCCGGACACCCCGCTGTGGGTGATAGGTTGGGGCTACACGCAGCAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007406-'7-12,'7-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.3=79.6)
A:
PF0008921=Trypsin=FE(25.1=100)
C2:
PF0008921=Trypsin=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCATGGCAGGTCAGC
R:
TAGCCCCAACCTATCACCCAC
Band lengths:
180-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]