MmuEX0048172 @ mm10
Exon Skipping
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:45175459-45177865:-
Coord C1 exon
chr9:45177706-45177865
Coord A exon
chr9:45176386-45176552
Coord C2 exon
chr9:45175459-45175557
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTAGCTATCTCTATCCCTAGGAA
3' ss Score
9.37
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACTGTGGAAAGAGCCTGAAGACTCCTCGTGTGGTGGGTGGGGTGGAGGCCCCTGTGGATTCTTGGCCGTGGCAGGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATCCTGGATCCCCACTGGATCCTCACAGCAGCCCACTGCTTCAG
Seq A exon
GAAGTATCTTGATGTGTCAAGCTGGAAGGTCAGGGCAGGCTCAAACATACTGGGTAACTCTCCATCCTTGCCTGTGGCCAAGATCTTCATCGCTGAACCCAATCCTCTGTACCCCAAAGAGAAGGACATTGCCCTTGTTAAGCTGCAGATGCCACTCACATTCTCAG
Seq C2 exon
GCTCAGTCAGGCCCATCTGCCTGCCCTTCTCTGATGAGGTGCTTGTCCCAGCCACACCAGTCTGGGTCATTGGATGGGGCTTTACAGAAGAAAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
A:
PF0008921=Trypsin=FE(24.9=100)
C2:
PF0008921=Trypsin=PD(24.2=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCTGAAGACTCCTCGTG
R:
TCCGTTTTCTTCTGTAAAGCCCC
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types