DreEX6075370 @ danRer10
Exon Skipping
Gene
ENSDARG00000103117 | tmprss4a
Description
transmembrane protease, serine 4a [Source:ZFIN;Acc:ZDB-GENE-061103-631]
Coordinates
chr15:12520788-12524853:+
Coord C1 exon
chr15:12520788-12520953
Coord A exon
chr15:12523275-12523444
Coord C2 exon
chr15:12524758-12524853
Length
170 bp
Sequences
Splice sites
3' ss Seq
CATTGTTGTGTGTTGTTTAGGGA
3' ss Score
8.34
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CAGACTGTGGTTTGTCCAGAAACCAGGACCGGATTGTTGGTGGAAAGGATGCTGACATTGCGAACTGGCCCTGGCAGGTCAGCTTGCAGTATAGCGGCCAGCATACATGCGGAGGATCACTGGTGACTCCAAACTGGGTGGTCACTGCGGCCCACTGTTTCAATGG
Seq A exon
GGATGGCAGGAAAGCTCTGAGCCGGTGGACCGTCGTCTCAGGAATTACGTATCTGAGTTCTACTCCATCTTCATATGTGAAAGAAATCATCGTTAACAGCAATTACAAACCAGCAGAAAGTGACTTTGACATTACTATGATCAAACTTCAGTCTCCAATCACTTTGTCAG
Seq C2 exon
AATCACGTAGACCAGTGTGTTTACCTCCTCAAAACCTCGGTCTGAAAGGAGGAGACGGTTTAGTTGTCACCGGCTGGGGTCATATGGCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103117-'10-12,'10-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(6.1=10.7),PF0008921=Trypsin=PU(19.4=78.6)
A:
PF0008921=Trypsin=FE(25.1=100)
C2:
PF0008921=Trypsin=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAACCAGGACCGGATTG
R:
TTTCTGCCATATGACCCCAGC
Band lengths:
244-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]