RnoEX6035520 @ rn6
Exon Skipping
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49472781-49474928:-
Coord C1 exon
chr8:49474769-49474928
Coord A exon
chr8:49473669-49473835
Coord C2 exon
chr8:49472781-49472879
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTAGCCATCTCTTTCCCTAGGAA
3' ss Score
8.7
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACTGTGGAAAGAGCCTGAAGACTACTCGTGTGGTGGGTGGGGTGGAGGCCTCTGCGGATTCTTGGCCGTGGCAAGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATTCTGGACCACCACTGGATTCTCACAGCAGCCCACTGCTTCAG
Seq A exon
GAAATATCTTGACGTGTCCAGCTGGAAGGTGAGGGCCGGCTCAAACAAGCTGGGTAACTCTCCGTCCTTGCCTGTGGCCAAGATCTTCATTGCTGAACCCAATCCCCTGCAACCCAAAGAGAAGGACATTGCCCTCGTTAAGCTGAAGATGCCGCTCACATTCTCAG
Seq C2 exon
GCTCGGTCAGGCCCATCTGCCTGCCTTTCTCTGATGAAGAGCTCATCCCAACCATGCCAGTCTGGGTCATTGGATGGGGCTTTACAGAGGAAAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
A:
PF0008921=Trypsin=FE(24.9=100)
C2:
PF0008921=Trypsin=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAAGACTACTCGTGTGG
R:
CGTTTTCCTCTGTAAAGCCCCA
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]