GgaEX6025861 @ galGal3
Exon Skipping
Gene
ENSGALG00000007406 | F1N9M8_CHICK
Description
NA
Coordinates
chr24:5557215-5557936:+
Coord C1 exon
chr24:5557215-5557316
Coord A exon
chr24:5557401-5557441
Coord C2 exon
chr24:5557777-5557936
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCTCCCTCTTCTAGGAA
3' ss Score
13.99
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CACCCCAACTTTCCACGCAGTGGATGCGGGTGCAGGACAGCCCCTGCCTCCCCGTGAGCTGGTGCTGAGCAACGGCCGCCTGCAGCTGCCAGAGCCAGGCAG
Seq A exon
GAAGTGCCTCTCTGGATCGGTTGTTTCCCTCCTTTGTTCCA
Seq C2 exon
GCTGCGGGGAGAGCGTGCGGACGCCGCGTGTGCTGGGCGGGCGGCCGGCGGCCATCGAGGCCTGGCCATGGCAGGTCAGCCTGCGTTACCGCGGGGAGCACATCTGCGGCGGCAGCATCATCGATCCCCTCTGGATCCTCACTGCCGCGCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007406-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.6=100)
A:
PF154941=SRCR_2=FE(15.1=100)
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.3=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCGTGAGCTGGTG
R:
CTGACCTGCCATGGCCAG
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]