MmuEX6065502 @ mm10
Exon Skipping
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:45177706-45180751:-
Coord C1 exon
chr9:45180650-45180751
Coord A exon
chr9:45179403-45179443
Coord C2 exon
chr9:45177706-45177865
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCCCCGTCTTTCTCTTTCAGATC
3' ss Score
13.99
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCAGCCCGCTTTCAGAGCAGTGGAGATCCGTCCAGATCAGAACCTCCCTGTTGCTCAAGTCACAGGAAACAGCCAGGAACTTCAGGTGCAGAATGGAAGCAG
Seq A exon
ATCCTGCCTCTCAGGCTCCCTGGTTTCCTTGCGCTGCCTTG
Seq C2 exon
ACTGTGGAAAGAGCCTGAAGACTCCTCGTGTGGTGGGTGGGGTGGAGGCCCCTGTGGATTCTTGGCCGTGGCAGGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATCCTGGATCCCCACTGGATCCTCACAGCAGCCCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-'10-14,'10-11,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.6=100)
A:
PF154941=SRCR_2=FE(15.1=100)
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGCAGAATGGAAGCAG
R:
GATGCTCCCACCACAGACATG
Band lengths:
140-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types