MmuEX6065502 @ mm9
Exon Skipping
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:44985789-44988834:-
Coord C1 exon
chr9:44988733-44988834
Coord A exon
chr9:44987486-44987526
Coord C2 exon
chr9:44985789-44985948
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCCCCGTCTTTCTCTTTCAGATC
3' ss Score
13.99
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCAGCCCGCTTTCAGAGCAGTGGAGATCCGTCCAGATCAGAACCTCCCTGTTGCTCAAGTCACAGGAAACAGCCAGGAACTTCAGGTGCAGAATGGAAGCAG
Seq A exon
ATCCTGCCTCTCAGGCTCCCTGGTTTCCTTGCGCTGCCTTG
Seq C2 exon
ACTGTGGAAAGAGCCTGAAGACTCCTCGTGTGGTGGGTGGGGTGGAGGCCCCTGTGGATTCTTGGCCGTGGCAGGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATCCTGGATCCCCACTGGATCCTCACAGCAGCCCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.6=100)
A:
PF154941=SRCR_2=FE(15.1=100)
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGCAGAATGGAAGCAG
R:
GATGCTCCCACCACAGACATG
Band lengths:
140-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: