GgaEX6025861 @ galGal4
Exon Skipping
Gene
ENSGALG00000007406 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr24:5436967-5437688:+
Coord C1 exon
chr24:5436967-5437068
Coord A exon
chr24:5437153-5437193
Coord C2 exon
chr24:5437529-5437688
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCTCCCTCTTCTAGGAA
3' ss Score
13.99
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CACCCCAACTTTCCACGCAGTGGATGCGGGTGCAGGACAGCCCCTGCCTCCCCGTGAGCTGGTGCTGAGCAACGGCCGCCTGCAGCTGCCAGAGCCAGGCAG
Seq A exon
GAAGTGCCTCTCTGGATCGGTTGTTTCCCTCCTTTGTTCCA
Seq C2 exon
GCTGCGGGGAGAGCGTGCGGACGCCGCGTGTGCTGGGCGGGCGGCCGGCGGCCATCGAGGCCTGGCCATGGCAGGTCAGCCTGCGTTACCGCGGGGAGCACATCTGCGGCGGCAGCATCATCGATCCCCTCTGGATCCTCACTGCCGCGCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007406-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.6=100)
A:
PF154941=SRCR_2=FE(15.1=100)
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.3=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCGTGAGCTGGTG
R:
CTGACCTGCCATGGCCAG
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]