RnoEX6035518 @ rn6
Exon Skipping
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49474769-49478108:-
Coord C1 exon
chr8:49478007-49478108
Coord A exon
chr8:49476474-49476514
Coord C2 exon
chr8:49474769-49474928
Length
41 bp
Sequences
Splice sites
3' ss Seq
GCCCTATGTGTCTCTTTCAGATC
3' ss Score
13.06
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CCAACCCGCTTTTGGACCAGTGGAGATGGGCCCAAACCAGACTCTCCTCGTCACCCCAGTCACAGGAAACAGCCAGGAACTTCAGATGCAGAATGGAAGCAG
Seq A exon
ATCCTGCCTCTCAGGCTCCCTGGTTTCCCTGCGCTGCCTTG
Seq C2 exon
ACTGTGGAAAGAGCCTGAAGACTACTCGTGTGGTGGGTGGGGTGGAGGCCTCTGCGGATTCTTGGCCGTGGCAAGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATTCTGGACCACCACTGGATTCTCACAGCAGCCCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650-'11-11,'11-9,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(36.6=100)
A:
PF154941=SRCR_2=FE(15.1=100)
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTTTGGACCAGTGGAGAT
R:
ACCCACCACACGAGTAGTCTT
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]