GgaEX6027190 @ galGal3
Exon Skipping
Gene
ENSGALG00000000252 | Q8AV15_CHICK
Description
NA
Coordinates
chr27:1550060-1551944:-
Coord C1 exon
chr27:1551821-1551944
Coord A exon
chr27:1551207-1551445
Coord C2 exon
chr27:1550060-1550233
Length
239 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTCCTGCCCTCAGAGC
3' ss Score
11.2
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTCAACCCAGCCAACGAGACAGAGAAATCAGACTCCAACCACCTCACCGTGGGCAATCAAGATGGGCCAGGGCTTGAGAAGAGGGTGGGGAGTGCCGTCAGCGTCATCTCCAACACCATGGAAG
Seq A exon
AGCTGGAGGAAGCTCACCAGAAGTGCCCATCCTGGTGGTACAAATTTGCCCACACGTTCCTGGTGTGGGACTGCTGCTATCCGTGGCTGAAGCTGAAGCAATTTGTCAAGCTGGTGGTGATGGACCCCTTCGTGGACCTGGGCATCACCATCTGCATCGTGCTCAACACGCTGTTCATGGCCATGGAGCACTACCCCATGACAGAGGAGTTTGAGAACGTGCTGACCGTGGGGAACCTG
Seq C2 exon
GTGTTCACGGGGATCTTCACGGCAGAGATGGTGCTGAAGCTCATCGCTCTGGACCCCTACGAGTACTTCCAGCAGGGCTGGAACATCTTTGACAGCATCATCGTCACGCTGAGCCTGGTGGAGCTGGGGCTGGCCAATGTGCAGGGGCTCTCCGTGCTGCGCTCCTTCCGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(2.0=3.8)
C2:
PF0052026=Ion_trans=FE(38.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCAACGAGACAGAGAAA
R:
CAAGCGGAAGGAGCGCAG
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]