BtaEX6089643 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004770 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr19:48812138-48816887:-
Coord C1 exon
chr19:48816734-48816887
Coord A exon
chr19:48814318-48814556
Coord C2 exon
chr19:48812138-48812311
Length
239 bp
Sequences
Splice sites
3' ss Seq
CATCTGCCGTCTGTTTTCAGAGC
3' ss Score
10.82
5' ss Seq
CTGGTACGG
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCCAAGGCCGCCCAGGCTCTGGAAGGTGGGGAGGTGGACGGGGACCCAGCACACAGCAAAGACTGCAACGGCAGCCTGGACACATCGGCGGGGGAGAAGGGGCCTCCGAGGCCAAGCTGCGGCACAGACAGCGGTATTTCCGATGCCATGGAAG
Seq A exon
AGCTGGAAGAGGCCCACCAGAAGTGCCCACCATGGTGGTACAAATGTTCCCATAAAGTGCTGATATGGAACTGCTGCACCCCGTGGGTGAAGTTCAAGAAGATCGTCAACCTGATCGTCATGGACCCCTTCGTGGACCTGGGCATCACCATCTGCATCGTGCTCAACACCCTCTTCATGGCCATGGAGCATTACCCAATGACAGAGCACTTTGACAGTGTGCTCAACGTGGGCAACCTG
Seq C2 exon
GTCTTCACAGGCATCTTCACAGCTGAGATGGTGCTGAAGCTCATTGCCATGGACCCCTACGAGTACTTCCAGCAGGGCTGGAACATCTTCGACAGTATCATTGTCACCCTCAGCCTGGTGGAGCTGGGCCTGGCCAATGTGCAGGGGCTGTCGGTGCTCCGCTCCTTCCGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004770-'9-11,'9-9,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGGAAGGTGGGGAG
R:
GACAGCCCCTGCACATTGG
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]