DreEX6067613 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4839618-4842334:+
Coord C1 exon
chr12:4839618-4839738
Coord A exon
chr12:4841235-4841473
Coord C2 exon
chr12:4842161-4842334
Length
239 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTTTGTCTCTCTAGGGT
3' ss Score
12.2
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
TTATCAGCAGAAGAGGACCAGAAGTCTCTGAGTTCAAAACACAGCATGCAGTACTTGGACCAGCCCAAACTCTCCAAGAGAACAGCTAGTGCTCTCAGTGTACTCACTGCAACTATGGAGG
Seq A exon
GGTTGGAGGATGCCCAGAGGCCTTGTCCCCCTGGCTGGTATAAGTTTGCGGATATGTTCCTTAAATGGGACTGCTGCGCTCCCTGGATCTTGTTTAAGAAGTGGGTTCATTTTGTAGTGATGGACCCATTCGTTGACCTGGGTATCACCATCTGCATTGTGCTCAATACACTGTTCATGGCCATGGAGCATTACCCTATGAGTCCACATTTTGAACATGTCCTCTCAGTGGGCAACTTG
Seq C2 exon
GTGTTCACAGGAATCTTCACAGCTGAAATGGTGTTCAAGCTTATAGCTATGGACCCTTACTACTACTTCCAGGTGGGCTGGAACATTTTTGACAGCATCATTGTCACACTCAGCCTGGTGGAGTTGGGACTGGCCAACGTTCAGGGATTGTCCGTTCTAAGGTCCTTTCGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGAAGAGGACCAGAAGT
R:
CAAACGAAAGGACCTTAGAACGGA
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]