BtaEX6009368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018520 | SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr2:30361553-30368606:+
Coord C1 exon
chr2:30361553-30361685
Coord A exon
chr2:30366891-30367129
Coord C2 exon
chr2:30368433-30368606
Length
239 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTTTTAATCTAGAAC
3' ss Score
8.08
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GGAACAACCACTGAAACTGAAATGAGAAAGAGAAGGTCAAGTTCTTTTCATGTTTCCATGGACTTTCTAGAAGATCCATCTCAAAGGCAAAGAGCAATGAGCATAGCCAGCATTTTAACAAATACAGTAGAAG
Seq A exon
AACTTGAAGAATCCAGGCAGAAATGCCCACCCTGTTGGTATAAATTTTCCAACATATTCTTAATCTGGGACTGTTCGCCATACTGGTTAAAAGTGAAACATGTTGTCAACCTGGTTGTGATGGACCCTTTTGTTGACCTGGCCATCACCATCTGCATTGTCTTAAACACTCTCTTCATGGCCATGGAGCACTATCCCATGACAGACCATTTCAATAATGTGCTTACAGTAGGAAACTTG
Seq C2 exon
GTTTTCACTGGGATCTTTACAGCAGAAATGTTTCTGAAAATTATTGCCATGGATCCTTACTATTATTTCCAAGAAGGCTGGAATATCTTTGATGGTTTTATTGTAACGCTTAGCCTGGTAGAACTTGGCCTGGCCAACGTGGAAGGATTATCAGTTCTCCGTTCATTCCGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018520-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.4=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAACCACTGAAACTGAAA
R:
ACGGAATGAACGGAGAACTGA
Band lengths:
304-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]