MmuEX6101750 @ mm10
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66320868-66323444:-
Coord C1 exon
chr2:66323312-66323444
Coord A exon
chr2:66322254-66322492
Coord C2 exon
chr2:66320868-66321041
Length
239 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTTAAATCTAGAAC
3' ss Score
7.36
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAACAACCACTGAAACTGAGATGAGAAAGAGGAGGTCGAGCTCTTTCCATGTTTCCATGGACTTTCTAGAAGATCCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCATCTTAACAAATACAGTAGAAG
Seq A exon
AACTAGAAGAATCCAGGCAGAAATGTCCACCCTGTTGGTATAAATTTTCCAACATATTCTTAATTTGGGACTGTTCTCCATATTGGCTGAAAGTTAAACATATTGTCAACCTGGTGGTGATGGACCCATTTGTTGATCTGGCCATTACCATCTGCATTGTGTTAAATACGCTCTTCATGGCTATGGAGCACTACCCCATGACTGAACATTTCAACCATGTTCTTACAGTGGGAAACTTG
Seq C2 exon
GTCTTCACTGGGATTTTCACAGCAGAAATGTTCCTGAAAATCATCGCAATGGATCCTTACTATTACTTCCAAGAAGGCTGGAATATCTTTGATGGTTTCATTGTGACACTCAGCCTGGTAGAACTTGGCCTTGCCAATGTGGAAGGATTGTCAGTTCTCCGTTCATTTCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.4=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAACCACTGAAACTGAGA
R:
CGGAGAACTGACAATCCTTCCA
Band lengths:
294-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types