DmeEX6002876 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16489343-16492515:-
Coord C1 exon
chrX:16492447-16492515
Coord A exon
chrX:16489600-16489877
Coord C2 exon
chrX:16489343-16489516
Length
278 bp
Sequences
Splice sites
3' ss Seq
CAAATTTTTGTATGGTTCAGTCT
3' ss Score
4.76
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATGTGATGGTCCTGAATGACATCATCGAACAGGCCGCTGGTCGGCACAGTCGGGCAAGCGATCGCGGTG
Seq A exon
TCTCCGTTTACTATTTCCCAACAGAGGACGATGACGAGGATGGGCCGACGTTCAAAGACAAGGCACTCGAAGTGATCCTCAAAGGCATCGATGTGTTTTGTGTGTGGGACTGTTGCTGGGTTTGGTTGAAATTTCAGGAGTGGGTATCGCTCATCGTCTTCGATCCCTTCGTCGAGCTCTTCATCACGCTGTGCATTGTGGTCAACACGATGTTCATGGCAATGGATCACCACGATATGAACAAGGAGATGGAACGCGTGCTCAAGAGTGGCAACTAT
Seq C2 exon
TTCTTCACCGCCACCTTTGCCATCGAGGCCACCATGAAGCTAATGGCCATGAGCCCCAAGTACTATTTCCAGGAGGGCTGGAACATCTTCGACTTCATTATCGTGGCCCTATCGCTATTGGAACTGGGACTCGAGGGTGTCCAGGGTCTGTCCGTATTGCGTTCCTTTCGATTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-'24-26,'24-24,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(1.6=3.2)
C2:
PF0052026=Ion_trans=FE(30.3=100)
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0309614, FBpp0311217
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGGTCCTGAATGACATCA
R:
GCAATACGGACAGACCCTGGA
Band lengths:
228-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)