GgaEX6042530 @ galGal4
Exon Skipping
Gene
ENSGALG00000011040 | SCN3A
Description
sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr7:19427291-19431785:+
Coord C1 exon
chr7:19427291-19427423
Coord A exon
chr7:19428570-19428808
Coord C2 exon
chr7:19431612-19431785
Length
239 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTTTTTTTTCCCAGAGC
3' ss Score
9.69
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCACCACTACTGAAACAGAAATAAGAAAAAGAAGACTGAGTTCTTATCAGATTTCCATGGAAATGCTGGAAGATTCTGCTGCAAGACAAAGAGCAATGAGTATAGCCAGTATACTTACAAACACAATGGAAG
Seq A exon
AGCTTGAAGAATCCAGACAGAAATGTCCCCCATGCTGGTACAGATTTGCAAATACTTTCTTGATCTGGGATTGCTGGAGTCCATGGTTAAAAGTAAAACATGTTGTCAATTTAGTAGTGATGGATCCATTTGTTGATCTTGCTATAACTATTTGCATTGTTTTGAACACCTTGTTTATGGCCATGGAACATTACCCAATGACAGAACAATTTAGCAGTGTCCTTTCTGTGGGAAACCTG
Seq C2 exon
GTATTCACCGGGATATTCACAGCAGAAATGGTACTAAAGATAATTGCTATGGACCCTTATTATTATTTCCAAGAAGGCTGGAATATTTTTGATGGTATTATCGTTAGCCTTAGTTTAATGGAGCTTGGTCTTGCAAATGTTGAAGGATTATCAGTTCTTCGCTCATTCAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'12-15,'12-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.4=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCACTACTGAAACAGAA
R:
TCTGAATGAGCGAAGAACTGA
Band lengths:
304-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]