RnoEX6017121 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51572500-51580922:-
Coord C1 exon
chr3:51580790-51580922
Coord A exon
chr3:51579741-51579979
Coord C2 exon
chr3:51572500-51572673
Length
239 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTATTACCCACCAGAAC
3' ss Score
6.91
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGTACCACCACTGAAACGGAAGTCAGGAAGAGAAGGCTAAGTTCTTACCAGATTTCGATGGAAATGCTGGAGGATTCCTCTGGAAGACAAAGAGCCATGAGCATAGCCAGTATCCTGACCAACACCATGGAGG
Seq A exon
AACTTGAAGAATCTAGACAGAAGTGCCCACCATGCTGGTATAGATTCGCCAATGTGTTTTTGATCTGGGACTGCTGTGATGCATGGTTAAAAGTGAAGCATCTTGTGAATTTAATTGTGATGGATCCATTTGTTGATCTTGCCATAACAATTTGCATCGTATTAAATACACTGTTCATGGCCATGGAGCACTATCCCATGACCCAGCAGTTCAGCAGTGTGCTGACTGTGGGAAACCTG
Seq C2 exon
GTCTTCACTGGGATCTTCACAGCCGAAATGGTCCTTAAAATCATTGCCATGGACCCCTATTATTATTTCCAAGAGGGCTGGAATATTTTCGATGGAATTATTGTTAGCCTGAGTTTAATGGAGCTAGGCCTGGCAAATGTGGAGGGGCTGTCTGTGCTTCGGTCCTTCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'23-21,'23-20,25-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(0.7=2.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
ENSRNOT00000006646fB12983
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCACCACTGAAACGGAA
R:
GAAGGACCGAAGCACAGACAG
Band lengths:
301-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]