DreEX6029422 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52348889-52355254:-
Coord C1 exon
chr2:52355137-52355254
Coord A exon
chr2:52353053-52353291
Coord C2 exon
chr2:52348889-52349062
Length
239 bp
Sequences
Splice sites
3' ss Seq
CCCCTTATTTCTCCTCTTAGAAC
3' ss Score
9.6
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GAGCCAGAGTGTCAGAATGAACAAGTCAAGCTGACTGTGGATGTCCAGGAGGAAGTCCTGCCTCCTCGCAGGAAGAGAGGACTGAGCTCTGTCAGCTTCTTCAGTGACGCCATGGATG
Seq A exon
AACTGGAAGAGGCCCGTCAGAAGTGTCCTCCATGCTGGTATGAGTTTGCACAGAAGTATCTGATTTGGACGTGTTCTCCTGCCTGGCTGAGAGTGAAGGAAGGGCTTAAAGTCATGGTGATGGACCCGTTCCTGGACCTCGCCATTACCATCTGCATAGTTCTCAACACGTTATTCATGGCCCTCGAGCACTATCCTATGACTGACGAATTCAACAGCATGCTGAGTATTGGAAACCTG
Seq C2 exon
GTGTTCACTGGAATCTTCACGGCGGAGATGGTGCTGAAGATCTTTGCTCTGGATCCATATTATTACTTTCAGCAAGGCTGGAACATCTTTGATGGAATTATTGTTTGTTTGAGTCTGATGGAGTTGGGTCTTTCCAATGTGGAGGGTCTGTCTGTTCTTCGCTCGTTCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'14-14,'14-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(13.3=80.0)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGAGTGTCAGAATGAACA
R:
CAGTCTGAACGAGCGAAGAACA
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]