GgaEX6018328 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5514457-5522895:+
Coord C1 exon
chr2:5514457-5514589
Coord A exon
chr2:5518253-5518491
Coord C2 exon
chr2:5522722-5522895
Length
239 bp
Sequences
Splice sites
3' ss Seq
CTTTACTGCTTGTGTCTTAGAGC
3' ss Score
8.32
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACCTCTCCCTCAGATGAGGCCAGCAAGAAGCAGCTTTTAATGCCCCATCGCCCATCGGTGGACCACTCAGATGAGCCCTTCCAGAGACAGAGGGCAGTGAGTGCTGTCAGCATCATCACCAGTGCCCTGGAAG
Seq A exon
AGCTTGAGGAATCACACCAGAAATGCCCTCCATGCTGGAACCACTTTGCTGTTAAATTTCTCATTTGGGATTGCTGCCCGTTTTGGCTTTTAATCAAGAAATTTGTCAAGTTTGTGGTAATGGACCCATTTACTGACCTCACCATCACCCTCTGCATTGTGCTGAACACACTCTTCATGGCGTTGGAGCATTATAAGATGACAAAGGAGTTTGACCACATGCTTTACATAGGCAATTTG
Seq C2 exon
GTCTTCACTGGGATTTTTACAGCAGAAATGATCTTCAAAGTAATTGCCCTTGACCCTTACTACTATTTTCAGCAGGGCTGGAACATTTTTGACAGCATAATTGTTATACTGAGCCTGATGGAACTGGGTTTATCCAGCATGGGGAACCTGTCTGTGTTACGCTCCTTTCGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'16-19,'16-17,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.9=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGAGGCCAGCAAGAAGC
R:
CGAAAGGAGCGTAACACAGACA
Band lengths:
293-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]