RnoEX6038194 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128208062-128216007:-
Coord C1 exon
chr8:128215875-128216007
Coord A exon
chr8:128214797-128215035
Coord C2 exon
chr8:128208062-128208235
Length
239 bp
Sequences
Splice sites
3' ss Seq
AACCCCCTGGCTGTCCCCAGAGT
3' ss Score
7.86
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ACCACTCCGTCAGAGGAGCCCGGTGGGCCCCAGATGCTGACACCTCAGGCTCCGTGTGCAGATGGTTTTGAGGAGCCCGGAGCACGGCAACGGGCACTCAGCGCTGTCAGTGTCCTCACCAGTGCCCTGGAAG
Seq A exon
AGTTGGAGGAGTCCCATCGGAAGTGTCCACCATGCTGGAACCGCTTTGCCCAGCACTACCTCATCTGGGAGTGCTGTCCACTCTGGATGTCCATCAAGCAGAAGGTGAAGTTTGTGGTCATGGACCCATTTGCCGACCTCACTATCACCATGTGCATCGTGCTCAATACGCTCTTCATGGCTCTGGAGCATTACAACATGACGGCAGAGTTTGAGGAGATGCTGCAGGTCGGAAACCTG
Seq C2 exon
GTCTTCACGGGAATCTTCACAGCGGAGATGACCTTCAAGATCATCGCCCTTGACCCCTACTACTACTTCCAGCAGGGCTGGAATATCTTCGACAGCATCATCGTCATCCTCAGTCTCATGGAGCTGGGGCTGTCCCGCATGGGCAACTTGTCTGTGCTACGTTCCTTCCGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'20-22,'20-20,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(17.8=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGGAGCCCGGTGG
R:
CGGAAGGAACGTAGCACAGAC
Band lengths:
295-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]