DreEX6096638 @ danRer10
Exon Skipping
Gene
ENSDARG00000102312 | CABZ01063402.1
Description
NA
Coordinates
chr24:40757389-40780452:+
Coord C1 exon
chr24:40757389-40757497
Coord A exon
chr24:40772316-40772554
Coord C2 exon
chr24:40780279-40780452
Length
239 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGTTGTGTGTGTCAGAGC
3' ss Score
8.53
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GGCCAGAACTCCTCCAATGAGCTGAGCAGTATGCTGCTGCCCCAGCTGCCCCCAGAGGGCCGAGACCGAGCCCTGAGCGCAACCAGCTACATCACTGACGCCATGGAGG
Seq A exon
AGCTGGAGGAGGCGCAGCAGAAGTGTCACCCGTGCTGGTACGTGTTTGCGCACAAGTATCTGGTGTGGACGTGTTCTCCGCGCTGGCTAAAGGTGAAGGAGTGGGTGAAGATCATGGTGATGGACCCCTTTCTGGATCTGGCCATCACTATCTGCATCGTCCTCAACACACTGTTCATGGCGCTGGAGCATTACCCCATGACGGACGAGTTCAACCGCATGCTGTCTGTCGGAAACCTG
Seq C2 exon
GTGTTCACGGGGATCTTCACGGCTGAGATGGTGCTGAAAATCATCGCTCTGGACCCGTATTATTACTTTCAGCAGGGCTGGAACATTTTCGACAGTCTGATCGTCAGTCTGAGTCTGATGGAGCTCGGTTTGTCCAACGTGGAGGGTCTGTCTGTCCTGCGCTCATTCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102312-'13-13,'13-12,17-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(12.1=78.4)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(31.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAACTCCTCCAATGAGC
R:
GAATGAGCGCAGGACAGACAG
Band lengths:
276-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]