RnoEX6017175 @ rn6
Exon Skipping
Gene
ENSRNOG00000053122 | Scn1a
Description
sodium voltage-gated channel alpha subunit 1 [Source:RGD Symbol;Acc:69364]
Coordinates
chr3:52432167-52434681:-
Coord C1 exon
chr3:52434549-52434681
Coord A exon
chr3:52433582-52433820
Coord C2 exon
chr3:52432167-52432340
Length
239 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTTTTAAAATCTAGAAC
3' ss Score
6.97
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAACAACTACTGAAACTGAGATGAGAAAGAGGAGGTCAAGTTCTTTCCATGTTTCCATGGACTTTCTTGAGGATCCTTCCCAGAGGCAAAGGGCAATGAGCATTGCCAGCATCTTAACAAATACAGTAGAAG
Seq A exon
AACTAGAAGAATCCAGACAGAAATGTCCACCCTGTTGGTATAAATTTTCCAACATATTTTTAATTTGGGACTGTTCTCCATATTGGCTAAAAGTTAAACATATTGTCAACCTGGTTGTGATGGACCCATTTGTTGACCTGGCAATTACTATCTGTATTGTGTTAAATACCCTTTTCATGGCCATGGAGCACTACCCCATGACTGAACATTTCAATCATGTACTTACAGTAGGAAACTTG
Seq C2 exon
GTTTTCACTGGGATCTTCACAGCAGAAATGTTCCTGAAAATCATTGCCATGGACCCTTACTATTATTTCCAAGAGGGCTGGAATATCTTTGATGGTTTCATTGTGACACTCAGCCTGGTAGAACTTGGCCTTGCCAATGTGGAAGGGTTATCAGTTCTCCGTTCATTCCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053122-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.4=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGATGAGAAAGAGGAGGTCA
R:
CAGTCGGAATGAACGGAGAACT
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]