RnoEX6050159 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94528509-94533296:-
Coord C1 exon
chr10:94533143-94533296
Coord A exon
chr10:94530499-94530737
Coord C2 exon
chr10:94528509-94528682
Length
239 bp
Sequences
Splice sites
3' ss Seq
TACAACAACCCCACCTCCAGAGC
3' ss Score
4.63
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCTAAGGCTGCCCAGGCTCTGGAAAGTGGAGAGGAGGCAGATGGGGACCCAACCCACAACAAAGACTGCAATGGGAGCCTGGATGCATCCGGGGAGAAGGGGCCCCCAAGGCCAAGCTGCAGCGCAGACAGTGCCATCTCAGATGCTATGGAGG
Seq A exon
AGCTGGAAGAGGCCCATCAGAAGTGCCCACCGTGGTGGTACAAGTGTGCACACAAAGTCCTCATCTGGAACTGCTGTGCCCCGTGGGTGAAGTTCAAACATATAATCTACCTGATCGTCATGGACCCCTTTGTGGACCTGGGTATCACCATCTGCATTGTGCTCAACACCCTCTTCATGGCCATGGAGCACTACCCCATGACCGAGCACTTTGACAACGTGCTCTCCGTGGGCAACTTG
Seq C2 exon
GTCTTCACAGGCATCTTCACTGCGGAGATGGTGTTGAAGCTGATTGCCATGGACCCCTACGAGTATTTCCAACAGGGCTGGAACATCTTTGACAGTTTCATCGTCACCCTCAGCCTGGTGGAGCTGGGCCTGGCCAACGTACAGGGGCTGTCAGTGCTCCGTTCCTTCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGTGGAGAGGAGGCAGA
R:
GAAGGAACGGAGCACTGACAG
Band lengths:
302-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]