GgaEX6027190 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1643939-1645700:-
Coord C1 exon
chr27:1645577-1645700
Coord A exon
chr27:1644963-1645201
Coord C2 exon
chr27:1643939-1643989
Length
239 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTCCTGCCCTCAGAGC
3' ss Score
11.2
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
TTCAACCCAGCCAACGAGACAGAGAAATCAGACTCCAACCACCTCACCGTGGGCAATCAAGATGGGCCAGGGCTTGAGAAGAGGGTGGGGAGTGCCGTCAGCGTCATCTCCAACACCATGGAAG
Seq A exon
AGCTGGAGGAAGCTCACCAGAAGTGCCCATCCTGGTGGTACAAATTTGCCCACACGTTCCTGGTGTGGGACTGCTGCTATCCGTGGCTGAAGCTGAAGCAATTTGTCAAGCTGGTGGTGATGGACCCCTTCGTGGACCTGGGCATCACCATCTGCATCGTGCTCAACACGCTGTTCATGGCCATGGAGCACTACCCCATGACAGAGGAGTTTGAGAACGTGCTGACCGTGGGGAACCTG
Seq C2 exon
GTGTTCACGGGGATCTTCACGGCAGAGATGGTGCTGAAGCTCATCGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCAACGAGACAGAGAAA
R:
CGATGAGCTTCAGCACCATCT
Band lengths:
164-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]