GgaEX6029101 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17031225-17033969:-
Coord C1 exon
chr3:17033801-17033969
Coord A exon
chr3:17032261-17032344
Coord C2 exon
chr3:17031225-17031310
Length
84 bp
Sequences
Splice sites
3' ss Seq
TAGCTCCTTTGCTCTTACAGATC
3' ss Score
9.77
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTGAATGGATCATACGAGGCTCTCTCTGGTGGCACCACCACTGAAGGCTTTGAGGACTTCACTGGTGGGATTGCAGAATGGTATGAGTTGCAGAAGGCACCACCCAACCTCTTCAAAATCATTCAGAAAGCACTGCAGAAAGGCTCTCTCCTTGGCTGCTCCATCGAT
Seq A exon
ATCACCAGTGCAGCTGAGACAGAGGCAGTCACGTCGCAGAAGCTGGTGAAGGGACACGCGTACTCCGTCACCGGGGCAGAGGAG
Seq C2 exon
GTGAACTTCCGTGGAAGTATCCAGAAGCTCATCAGAATCCGAAATCCCTGGGGGGAAGTGGAGTGGACAGGGAAATGGAATGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'8-9,'8-7,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.7=100)
A:
PF0064816=Peptidase_C2=FE(11.2=100)
C2:
PF0064816=Peptidase_C2=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCACTGGTGGGATTGC
R:
CCCCAGGGATTTCGGATTCTG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]